STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_1203KEGG: afw:Anae109_1653 putative alkylated DNA repair protein. (208 aa)    
Predicted Functional Partners:
Gbro_1204
PFAM: FAD dependent oxidoreductase; glucose- methanol-choline oxidoreductase; KEGG: scl:sce0787 hypothetical protein.
       0.782
Gbro_1205
KEGG: reh:H16_A3740 cyclohexanone monooxygenase.
       0.782
Gbro_1206
PFAM: regulatory protein TetR; KEGG: mxa:MXAN_6906 TetR family transcriptional regulator.
       0.782
Gbro_1202
Hypothetical protein.
       0.633
Gbro_3395
PFAM: Ada metal-binding domain protein; AlkA domain protein; HhH-GPD family protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; HhH-GPD family protein; KEGG: acp:A2cp1_1029 transcriptional regulator, AraC family.
  
  
 0.585
Gbro_1207
TIGRFAM: putative F420-dependent oxidoreductase; PFAM: Luciferase-like, subgroup; KEGG: psa:PST_3597 luciferase family protein.
       0.521
Gbro_1746
Hypothetical protein.
     
 0.408
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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