STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_4067PFAM: MOSC domain containing protein; KEGG: eba:p2A329 hypothetical protein. (326 aa)    
Predicted Functional Partners:
Gbro_4066
PFAM: SNARE associated Golgi protein; KEGG: cvi:CV_1343 DedA family protein.
       0.773
Gbro_4065
PFAM: SNARE associated Golgi protein; KEGG: cvi:CV_1343 DedA family protein.
       0.642
glsA
PFAM: Glutaminase, core; KEGG: aci:ACIAD1040 glutaminase; Belongs to the glutaminase family.
 
  
  0.462
glsA-2
PFAM: Glutaminase, core; KEGG: aci:ACIAD1040 glutaminase; Belongs to the glutaminase family.
 
  
  0.452
Gbro_3842
PFAM: protein of unknown function DUF1271; KEGG: mxa:MXAN_4126 ferredoxin reductase.
  
  
  0.439
Gbro_4064
Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
       0.426
Gbro_3364
PFAM: cytochrome P450; KEGG: scl:sce3065 cytochrome P450 CYP110H1.
  
  
  0.413
Gbro_4160
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; KR domain protein; FAD-binding 9 siderophore- interacting domain protein; GntR domain protein; short- chain dehydrogenase/reductase SDR; KEGG: avn:Avin_08610 benzoate 1,2-dioxygenase reductase.
  
 
 0.406
Gbro_0233
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; Oxidoreductase FAD-binding domain protein; KEGG: ppg:PputGB1_3306 oxidoreductase FAD-binding subunit.
  
 
 0.405
Gbro_3633
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; KEGG: avn:Avin_08810 phenol hydroxylase, ferredoxin subunit.
  
 
 0.405
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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