STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_4603PFAM: regulatory protein TetR; KEGG: ank:AnaeK_2959 transcriptional regulator, TetR family. (211 aa)    
Predicted Functional Partners:
Gbro_4604
PFAM: aminoglycoside phosphotransferase; KEGG: scl:sce8922 hypothetical protein.
 
   
 0.863
Gbro_4605
KEGG: pla:Plav_2500 hypothetical protein.
 
   
 0.830
Gbro_1023
PFAM: regulatory protein TetR; KEGG: scl:sce7880 TetR family transcriptional regulator.
  
     0.602
Gbro_4602
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ank:AnaeK_1725 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.590
Gbro_3917
KEGG: bur:Bcep18194_A5490 hypothetical protein.
  
     0.588
Gbro_4587
PFAM: CoA-binding domain protein; KEGG: sat:SYN_02520 CoA binding protein.
       0.463
Gbro_4606
KEGG: hypothetical protein.
       0.459
Gbro_3695
KEGG: reh:H16_B0653 hypothetical protein.
  
     0.449
Gbro_3781
PFAM: regulatory protein TetR; KEGG: ara:Arad_0722 transcriptional regulator protein.
  
  
 0.443
Gbro_4299
PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
  
     0.433
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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