STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pleD_7Response regulator PleD. (331 aa)    
Predicted Functional Partners:
prkC_1
Serine/threonine-protein kinase PrkC.
   
 0.965
barA_2
Signal transduction histidine-protein kinase BarA.
 
 0.912
cph2_1
Phytochrome-like protein cph2.
 0.885
barA_1
Signal transduction histidine-protein kinase BarA.
 
 
 0.867
yjcC
Putative membrane protein YjcC.
 
 
 0.841
cph2_9
Phytochrome-like protein cph2.
 
 0.812
cph2_5
Phytochrome-like protein cph2.
 0.809
yycF_1
Transcriptional regulatory protein YycF.
 
 
 
  0.807
cph2_3
Phytochrome-like protein cph2.
0.802
ydaM_4
Putative diguanylate cyclase YdaM.
0.799
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.