A0A4S8IGM0 protein (Musa balbisiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4S8IGM0

MHD1 domain-containing protein. (225 aa)

Predicted Functional Partners:

A0A4S8JUX4

0.787

A0A4S8K2J9

0.743

A0A4S8IZX3

0.721

A0A4S8JZ29

0.708

A0A4S8J319

0.664

A0A4S8J4D3

0.664

A0A4S8JF26

0.639

A0A4S8K3R8

0.631

A0A4S8K5A0

0.631

A0A4S8IJ98

0.629

Your Current Organism:

Musa balbisiana

NCBI taxonomy Id: 52838
Other names: Balbis banana, M. balbisiana, Musa BB Group, Musa balbisiana Colla, starchy banana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4S8IGM0	A0A4S8IJ98	MHD1 domain-containing protein.	Uncharacterized protein.	0.629
A0A4S8IGM0	A0A4S8IZX3	MHD1 domain-containing protein.	TOG domain-containing protein.	0.721
A0A4S8IGM0	A0A4S8J319	MHD1 domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.664
A0A4S8IGM0	A0A4S8J4D3	MHD1 domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.664
A0A4S8IGM0	A0A4S8JF26	MHD1 domain-containing protein.	Sde2_N_Ubi domain-containing protein.	0.639
A0A4S8IGM0	A0A4S8JUX4	MHD1 domain-containing protein.	MIF4G domain-containing protein.	0.787
A0A4S8IGM0	A0A4S8JZ29	MHD1 domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.708
A0A4S8IGM0	A0A4S8K2J9	MHD1 domain-containing protein.	Uncharacterized protein.	0.743
A0A4S8IGM0	A0A4S8K3R8	MHD1 domain-containing protein.	Tr-type G domain-containing protein.	0.631
A0A4S8IGM0	A0A4S8K5A0	MHD1 domain-containing protein.	Uncharacterized protein.	0.631
A0A4S8IJ98	A0A4S8IGM0	Uncharacterized protein.	MHD1 domain-containing protein.	0.629
A0A4S8IJ98	A0A4S8J319	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.999
A0A4S8IJ98	A0A4S8J4D3	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.999
A0A4S8IJ98	A0A4S8JUX4	Uncharacterized protein.	MIF4G domain-containing protein.	0.999
A0A4S8IJ98	A0A4S8K2J9	Uncharacterized protein.	Uncharacterized protein.	0.593
A0A4S8IZX3	A0A4S8IGM0	TOG domain-containing protein.	MHD1 domain-containing protein.	0.721
A0A4S8IZX3	A0A4S8J319	TOG domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.956
A0A4S8IZX3	A0A4S8J4D3	TOG domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.956
A0A4S8IZX3	A0A4S8JUX4	TOG domain-containing protein.	MIF4G domain-containing protein.	0.965
A0A4S8IZX3	A0A4S8JZ29	TOG domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.995