STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0002340Uridine kinase; Belongs to the uridine kinase family. (551 aa)    
Predicted Functional Partners:
BN2166_0009110
Uncharacterized protein.
    
 0.946
BN2166_0019340
Uridylate kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and dUMP as phosphate acceptors, but can also use CMP, dCMP and AMP. Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.
   
 0.863
BN2166_0031510
BY PROTMAP: gi|342319597|gb|EGU11544.1| Cytosine deaminase [Rhodotorula glutinis ATCC 204091].
     
 0.860
BN2166_0010210
Orotidine 5'-phosphate decarboxylase.
    
 0.849
BN2166_0046630
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
    
 0.840
BN2166_0013510
annotation not available
   
 0.827
BN2166_0013120
WD40-repeat-containing domain protein.
    
 0.827
BN2166_0046520
annotation not available
  
 0.823
BN2166_0031190
BY PROTMAP: gi|472585042|gb|EMS22608.1| uridine phosphorylase [Rhodosporidium toruloides NP11].
    
 0.817
BN2166_0012480
annotation not available
   
 0.808
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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