STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0014080FGENESH: predicted gene_2.577 protein. (754 aa)    
Predicted Functional Partners:
BN2166_0039240
Pyruvate dehydrogenase.
  
 0.991
BN2166_0026250
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 0.978
BN2166_0068360
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
  
 0.900
BN2166_0068320
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
  
 0.900
BN2166_0010180
FGENESH: predicted gene_2.187 protein.
  
 0.887
BN2166_0010170
2-oxoacid_dh domain-containing protein.
  
 0.887
BN2166_0024200
annotation not available
  
 0.876
BN2166_0027860
Acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
 0.876
BN2166_0058110
FGENESH: predicted gene_11.307 protein.
  
 
 0.867
BN2166_0058120
Dihydrolipoyl dehydrogenase.
  
 
 0.867
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.