STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0028300Uncharacterized protein. (423 aa)    
Predicted Functional Partners:
BN2166_0004360
zf-RING-like domain-containing protein.
    
 0.997
BN2166_0026010
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.997
BN2166_0027720
BY PROTMAP: gi|647399037|emb|CDR43407.1| RHTO0S08e01508g1_1 [Rhodosporidium toruloides].
    
 0.996
BN2166_0008370
MAGE family-domain containing protein.
    
 0.993
BN2166_0006120
Belongs to the ubiquitin-conjugating enzyme family.
   
 0.956
BN2166_0048750
Chalcone-flavanone isomerase-domain containing protein.
    
 0.927
BN2166_0057780
annotation not available
    
 0.927
BN2166_0028350
Structural maintenance of chromosomes protein.
    
 0.906
BN2166_0051140
Structural maintenance of chromosomes protein.
    
 0.885
BN2166_0073750
Structural maintenance of chromosomes protein.
    
 0.884
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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