STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0021070BY PROTMAP: gi|342321706|gb|EGU13638.1| Glutamine-tRNA ligase [Rhodotorula glutinis ATCC 204091]; Belongs to the class-I aminoacyl-tRNA synthetase family. (825 aa)    
Predicted Functional Partners:
BN2166_0071000
annotation not available
 
 0.996
BN2166_0071360
annotation not available
 
 0.988
BN2166_0058000
BY PROTMAP: gi|647399425|emb|CDR44186.1| RHTO0S09e00980g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uL23 family.
   
 0.984
BN2166_0063860
Ribosomal protein L21e-domain containing protein.
   
 0.984
BN2166_0002440
Ribosomal_L7Ae domain-containing protein.
   
 0.984
BN2166_0021630
annotation not available
  
 0.984
BN2166_0049340
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.982
BN2166_0064440
tRNA synthetases class I (E and Q), catalytic domain-domain containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.982
BN2166_0018930
BY PROTMAP: gi|472586645|gb|EMS24164.1| methionyl-tRNA synthetase [Rhodosporidium toruloides NP11]; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.981
BN2166_0053490
FGENESH: predicted gene_10.186 protein; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.981
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.