STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0070350FGENESH: predicted gene_16.61 protein. (1016 aa)    
Predicted Functional Partners:
BN2166_0010350
Putative regulation of transcription from Pol II promoter-related protein.
    
   0.743
BN2166_0047350
annotation not available
    
 
 0.727
BN2166_0053400
FGENESH: predicted gene_10.177 protein.
   
 
 0.603
BN2166_0053390
BY PROTMAP: gi|647394422|emb|CDR35651.1| RHTO0S01e04082g1_1 [Rhodosporidium toruloides].
   
 
 0.603
BN2166_0000620
BY PROTMAP: gi|342320614|gb|EGU12553.1| Translation repressor [Rhodotorula glutinis ATCC 204091].
   
 
 0.548
BN2166_0013790
annotation not available
   
 
 0.541
BN2166_0025310
annotation not available
   
 
 0.541
BN2166_0045340
BY PROTMAP: gi|647395273|emb|CDR36563.1| RHTO0S02e03840g1_1 [Rhodosporidium toruloides].
   
 
 0.541
BN2166_0049320
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
    
 
 0.501
BN2166_0006260
Armadillo-type fold.
   
 
 0.426
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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