STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0064640BY PROTMAP: gi|647400796|emb|CDR46547.1| RHTO0S12e06062g1_1 [Rhodosporidium toruloides]. (769 aa)    
Predicted Functional Partners:
BN2166_0031030
BY PROTMAP: gi|342319567|gb|EGU11514.1| Signal transducer [Rhodotorula glutinis ATCC 204091].
    
 0.980
BN2166_0073180
Uncharacterized protein.
    
 0.900
BN2166_0056870
Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
   
 0.866
BN2166_0010720
Uncharacterized protein.
   
 0.862
BN2166_0045050
BY PROTMAP: gi|647395300|emb|CDR36608.1| RHTO0S02e04434g1_1 [Rhodosporidium toruloides].
   
 0.862
BN2166_0026540
BY PROTMAP: gi|647403498|emb|CDR49612.1| RHTO0S28e01662g1_1 [Rhodosporidium toruloides].
 
 
  0.835
BN2166_0057200
Uncharacterized protein.
    
 0.827
BN2166_0066900
Eukaryotic porin/Tom40.
    
 0.810
BN2166_0059990
BY PROTMAP: gi|342321183|gb|EGU13118.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091].
   
 0.804
BN2166_0058780
BY PROTMAP: gi|342320583|gb|EGU12523.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091].
   
 0.804
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.