STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0050570FGENESH: predicted gene_9.403 protein. (546 aa)    
Predicted Functional Partners:
BN2166_0007990
Tryptophan synthase.
    
  0.777
BN2166_0009360
annotation not available
    
 0.658
BN2166_0009220
Glutamate-cysteine ligase-domain containing protein.
    
 0.658
BN2166_0042070
Homocysteine S-methyltransferase.
   
 0.560
BN2166_0057190
Glutathione synthetase.
   
 0.555
BN2166_0050440
Aldo/keto reductase family-domain containing protein.
  
 0.503
BN2166_0017330
Uncharacterized protein.
  
 0.475
BN2166_0029990
BY PROTMAP: gi|342321043|gb|EGU12981.1| Aldose reductase YakC [Rhodotorula glutinis ATCC 204091].
  
 0.475
BN2166_0039400
annotation not available
  
 0.475
BN2166_0046240
Putative aryl-alcohol dehydrogenase.
  
 0.475
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.