STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0057220BY PROTMAP: gi|342320233|gb|EGU12175.1| Nuclear export factor [Rhodotorula glutinis ATCC 204091]. (1461 aa)    
Predicted Functional Partners:
BN2166_0026830
Uncharacterized protein.
    
 
 0.990
BN2166_0011630
Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]
    
 
 0.986
BN2166_0004490
FGENESH: predicted gene_1.449 protein.
    
 
 0.986
BN2166_0034240
COP9 signalosome complex subunit 12.
   
 
 0.966
BN2166_0002940
annotation not available
    
 
 0.953
BN2166_0012030
FGENESH: predicted gene_2.372 protein.
    
 
 0.946
BN2166_0014660
COP9 signalosome complex subunit.
   
 
 0.937
BN2166_0025280
Uncharacterized protein.
    
 
 0.912
BN2166_0053860
RHTO0S01e03026g1_1; Belongs to the calmodulin family.
    
 
 0.720
BN2166_0046400
BY PROTMAP: gi|814539376|emb|CEQ43228.1| SPOSA6832_05138, partial [Sporidiobolus salmonicolor].
    
 
 0.720
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.