STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0070920BY PROTMAP: gi|647400917|emb|CDR46772.1| RHTO0S13e01486g1_1 [Rhodosporidium toruloides]. (404 aa)    
Predicted Functional Partners:
BN2166_0053790
BY PROTMAP: gi|342319187|gb|EGU11137.1| Pre-mRNA splicing factor [Rhodotorula glutinis ATCC 204091].
    
 0.993
BN2166_0019720
Pre-mRNA splicing factor component-domain containing protein.
   
 
 0.987
BN2166_0055270
P-loop containing nucleoside triphosphate hydrolase protein.
    
 
 0.986
BN2166_0071880
Uncharacterized protein.
   
 
 0.983
BN2166_0038210
BY PROTMAP: gi|647398784|emb|CDR43018.1| RHTO0S07e06656g1_1 [Rhodosporidium toruloides].
    
 0.982
BN2166_0026210
Bud31p.
    
 
 0.979
BN2166_0030560
annotation not available
   
 0.979
BN2166_0004790
Pre-mRNA-splicing factor CWC2.
    
 
 0.977
BN2166_0039690
SYF2 splicing factor-domain containing protein.
    
 0.977
BN2166_0028050
CWC16 protein.
   
 0.975
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.