STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0073170BY PROTMAP: gi|647395232|emb|CDR36495.1| RHTO0S02e02938g1_1 [Rhodosporidium toruloides]. (235 aa)    
Predicted Functional Partners:
BN2166_0053870
annotation not available
    
 
 0.698
BN2166_0008060
BY PROTMAP: gi|647395027|emb|CDR36263.1| RHTO0S01e17810g1_1 [Rhodosporidium toruloides].
    
 0.661
BN2166_0062840
MHD domain-containing protein.
    
 0.661
BN2166_0073690
FGENESH: predicted gene_18.20 protein.
    
 
 0.613
BN2166_0042410
FGENESH: predicted gene_8.96 protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.532
BN2166_0026330
FGENESH: predicted gene_5.178 protein.
    
 
 0.510
BN2166_0026320
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 
 0.510
BN2166_0035280
FGENESH: predicted gene_6.450 protein.
    
 0.478
BN2166_0035260
annotation not available
    
 0.478
BN2166_0037580
Dynamin central region-domain containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.478
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.