STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0074170annotation not available (645 aa)    
Predicted Functional Partners:
BN2166_0038620
Cyclin-dependent protein kinase inhibitor.
   
  0.792
BN2166_0025950
Malic enzyme.
  
  
 0.585
BN2166_0015770
Malic enzyme.
  
  
 0.585
BN2166_0073120
PLC-like phosphodiesterase, TIM beta/alpha-barrel-containing protein domain-containing protein.
    
  0.480
BN2166_0052280
S1/P1 nuclease.
 
  
   0.475
BN2166_0000180
FGENESH: predicted gene_1.18 protein.
    
  0.412
BN2166_0010380
Uncharacterized protein.
    
  0.412
BN2166_0013280
Para-aminobenzoate synthase, subunit I.
    
  0.412
BN2166_0040930
annotation not available
    
  0.412
BN2166_0061010
BY PROTMAP: gi|342321153|gb|EGU13088.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091].
    
  0.412
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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