STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_021158Putative tight junction-associated protein 1-like. (873 aa)    
Predicted Functional Partners:
SMAX5B_009336
Putative disks large-like 3-like; Belongs to the MAGUK family.
    
  0.864
SMAX5B_020773
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.857
SMAX5B_022460
Putative E3 ubiquitin-protein ligase RNF220-like.
   
 0.853
SMAX5B_016833
Putative AT-rich interactive domain-containing protein 4B isoform 2.
    
 0.843
SMAX5B_001062
Putative AT-rich interactive domain-containing protein 4A isoform 2.
    
 0.843
SMAX5B_004807
Putative disks large-like 2.
    
  0.839
SMAX5B_005568
RNA_pol_L_2 domain-containing protein.
   
 0.839
ENSSMAP00000032956
annotation not available
    
  0.839
SMAX5B_001282
DNA-directed RNA polymerase II subunit RPB3 isoform 2.
   
 0.835
SMAX5B_014306
Putative transcriptional adapter 3.
    
 0.824
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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