STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1895PFAM: Vault protein inter-alpha-trypsin domain protein; TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Vault protein inter-alpha-trypsin, metazoa; Tetratricopeptide domain protein; KEGG: scl:sce7031 hypothetical protein. (3156 aa)    
Predicted Functional Partners:
Psta_1896
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mno:Mnod_5360 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.773
Psta_1240
PFAM: protein of unknown function DUF1624; KEGG: rso:RSc2728 hypothetical protein.
  
     0.726
Psta_1242
PFAM: amine oxidase; KEGG: bra:BRADO3056 hypothetical protein.
  
     0.695
Psta_4419
KEGG: mno:Mnod_7207 hypothetical protein.
  
     0.659
Psta_2511
PFAM: TfoX domain protein; KEGG: pfl:PFL_5261 TfoX domain-containing protein.
  
     0.657
Psta_3474
PFAM: Kelch repeat-containing protein; Kelch repeat protein; SMART: Kelch repeat-containing protein; KEGG: scl:sce5357 hypothetical protein.
  
     0.622
Psta_2984
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE-like protein.
  
     0.534
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.523
Psta_4704
PFAM: Vitamin K-dependent gamma-carboxylase; SMART: HTTM domain protein; KEGG: mxa:MXAN_5026 vitamin K-dependent gamma- carboxylase-related protein.
  
     0.500
Psta_2281
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: aba:Acid345_4079 alpha amylase.
  
     0.496
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.