STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2428Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: aeh:Mlg_1873 diguanylate cyclase. (303 aa)    
Predicted Functional Partners:
Psta_2365
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.752
Psta_4348
PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cja:CJA_1928 flagellar hook protein FlgE.
 
    0.712
Psta_2364
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.705
Psta_2372
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
    0.657
flgK
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: dal:Dalk_0987 flagellar hook-associated protein FlgK.
 
    0.638
Psta_4350
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA.
 
     0.608
Psta_2237
PFAM: surface presentation of antigens (SPOA) protein; KEGG: rso:RSp0377 flagellar motor switch protein FliN.
 
    0.596
Psta_2362
TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ppd:Ppro_3449 flagellar basal body rod protein FlgG.
 
    0.584
Psta_2429
Hypothetical protein.
       0.572
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: pca:Pcar_1193 flagellar hook-basal body complex protein FliE.
 
    0.571
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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