STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2660Hypothetical protein; KEGG: NACA, TEBP; nascent polypeptide-associated complex alpha subunit. (492 aa)    
Predicted Functional Partners:
Psta_1940
KEGG: predicted protein; K03006 DNA-directed RNA polymerase II subunit A.
  
     0.729
Psta_0026
KEGG: Hypothetical protein CBG04553; K10695 E3 ubiquitin-protein ligase RNF1/2.
  
     0.669
Psta_2684
PFAM: Phytanoyl-CoA dioxygenase; KEGG: similar to Y105C5B.9.
  
     0.639
Psta_3174
PFAM: Phytanoyl-CoA dioxygenase; KEGG: similar to predicted protein.
  
     0.627
Psta_0970
Hypothetical protein; KEGG: GF17870 gene product from transcript GF17870- RA.
  
     0.564
Psta_0716
Hypothetical protein; KEGG: structural constituent of cell wall.
  
     0.540
Psta_0659
Hypothetical protein; KEGG: myosin heavy chain.
  
     0.474
Psta_0529
Hypothetical protein; KEGG: bpt:Bpet0659 colicin exporter.
  
     0.473
Psta_4624
TIGRFAM: phosphonate degradation operons associated HDIG domain protein; KEGG: cak:Caul_2988 hypothetical protein.
  
     0.466
Psta_1847
KEGG: hypothetical protein.
  
     0.437
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.