STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2763PFAM: Rhomboid family protein; KEGG: psa:PST_2418 rhomboid family protein. (346 aa)    
Predicted Functional Partners:
Psta_4417
PFAM: band 7 protein; KEGG: rpi:Rpic_1605 band 7 protein.
   
 0.660
Psta_4418
PFAM: band 7 protein; KEGG: gme:Gmet_0083 band 7 protein.
   
 0.660
Psta_4553
TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: dvu:DVU0366 5-formyltetrahydrofolate cyclo- ligase family protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.554
Psta_4163
KEGG: hch:HCH_02184 periplasmic protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.
 
     0.540
nagB
Glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. NagB subfamily.
       0.527
Psta_4056
PFAM: tRNA-hydroxylase; KEGG: maq:Maqu_1858 tRNA--hydroxylase.
  
     0.519
Psta_0931
PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: afw:Anae109_0062 sec-independent translocation protein MttA/Hcf106.
   
 
 0.484
tatA
Sec-independent translocation protein mttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.484
Psta_1306
PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: spe:Spro_4774 soluble pyridine nucleotide transhydrogenase.
  
    0.450
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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