STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3837KEGG: mmr:Mmar10_0440 hypothetical protein. (358 aa)    
Predicted Functional Partners:
Psta_3836
KEGG: mmr:Mmar10_1683 cellulose biosynthetic (CelD)-like protein.
 
    
0.797
Psta_3839
PFAM: O-antigen polymerase; KEGG: O-antigen polymerase.
 
     0.711
Psta_0137
KEGG: mxa:MXAN_2890 hypothetical protein.
  
     0.642
Psta_0138
PFAM: WGR domain protein; SMART: WGR domain protein; KEGG: mxa:MXAN_2892 WGR domain protein.
  
     0.632
Psta_0143
KEGG: mxa:MXAN_2889 radical SAM domain protein.
  
     0.615
Psta_0141
KEGG: mxa:MXAN_2887 hypothetical protein.
  
     0.611
Psta_0140
KEGG: rce:RC1_0811 hypothetical protein.
  
     0.592
Psta_3838
PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1076 glycosyl transferase family 2.
       0.565
Psta_3835
PFAM: glycosyl transferase family 2; KEGG: ppg:PputGB1_2715 glycosyl transferase family protein.
       0.496
Psta_3840
PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: mno:Mnod_5602 hypothetical protein.
  
    0.479
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.