STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3892PFAM: Cupin 2 conserved barrel domain protein; KEGG: bja:bll0129 hypothetical protein. (117 aa)    
Predicted Functional Partners:
Psta_3891
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sfu:Sfum_1981 xylose isomerase domain protein TIM barrel.
  
    0.603
Psta_3893
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: acr:Acry_2098 protein kinase.
       0.570
Psta_3890
PFAM: oxidoreductase domain protein; KEGG: ypk:y0251 oxidoreductase.
 
     0.565
Psta_1453
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bcz:BCZK3809 GntR family transcriptional regulator.
  
    0.526
cobB
PFAM: Silent information regulator protein Sir2; KEGG: pfl:PFL_2453 NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
  
    0.400
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.