STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIC_004444-hydroxyphenylpyruvate dioxygenase. (313 aa)    
Predicted Functional Partners:
FIC_00449
Homogentisate 1,2-dioxygenase.
 
 0.995
FIC_00442
Fumarylacetoacetase.
 
  
 0.925
FIC_01345
Aspartate aminotransferase.
   
 
 0.914
FIC_01433
Aminotransferase, class I.
   
 
 0.914
FIC_02175
Aspartate aminotransferase.
   
 
 0.914
hisC
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.912
FIC_00443
Hypothetical protein.
       0.773
FIC_00441
Hypothetical protein.
 
     0.701
FIC_00433
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit.
  
  
 0.606
FIC_02231
B12 binding domain / kinase domain / Methylmalonyl-CoA mutase.
     
 0.548
Your Current Organism:
Flavobacteriaceae bacterium 351910
NCBI taxonomy Id: 531844
Other names: F. bacterium 3519-10, Flavobacteriaceae bacterium 3519-10
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