STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIC_018882-dehydro-3-deoxygluconate kinase. (346 aa)    
Predicted Functional Partners:
FIC_01886
4-Hydroxy-2-oxoglutarate aldolase.
 
 0.998
FIC_01883
Altronate hydrolase.
  
 
 0.951
FIC_01739
D-mannonate oxidoreductase.
 
 0.882
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.871
FIC_01357
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.866
uxaC
Uronate isomerase.
 
   
 0.859
FIC_01885
Hexuronate transporter.
 
  
 0.833
FIC_01884
Altronate oxidoreductase.
 
   
 0.817
FIC_01887
Conserved hypothetical protein 22.
       0.784
FIC_01891
5-keto-D-gluconate 5-reductase.
 
 
 0.778
Your Current Organism:
Flavobacteriaceae bacterium 351910
NCBI taxonomy Id: 531844
Other names: F. bacterium 3519-10, Flavobacteriaceae bacterium 3519-10
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