D8PTL5_SCHCM protein (Schizophyllum commune)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8PTL5_SCHCM

Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1342 aa)

Predicted Functional Partners:

D8Q2B7_SCHCM

0.891

D8PZT7_SCHCM

0.633

D8Q8R0_SCHCM

0.613

D8Q327_SCHCM

0.605

D8Q9N3_SCHCM

0.605

D8PSR9_SCHCM

0.589

D8PQS4_SCHCM

0.575

D8PW12_SCHCM

0.570

D8PPS6_SCHCM

0.558

D8PQ06_SCHCM

0.548

Your Current Organism:

Schizophyllum commune

NCBI taxonomy Id: 578458
Other names: S. commune H4-8, Schizophyllum commune H4-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8PPS6_SCHCM	D8PQS4_SCHCM	D8PPS6	D8PQS4	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.999
D8PPS6_SCHCM	D8PSR9_SCHCM	D8PPS6	D8PSR9	Uncharacterized protein.	Uncharacterized protein.	0.999
D8PPS6_SCHCM	D8PTL5_SCHCM	D8PPS6	D8PTL5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.558
D8PPS6_SCHCM	D8PW12_SCHCM	D8PPS6	D8PW12	Uncharacterized protein.	Uncharacterized protein.	0.985
D8PPS6_SCHCM	D8Q8R0_SCHCM	D8PPS6	D8Q8R0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
D8PQ06_SCHCM	D8PTL5_SCHCM	D8PQ06	D8PTL5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.548
D8PQS4_SCHCM	D8PPS6_SCHCM	D8PQS4	D8PPS6	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.999
D8PQS4_SCHCM	D8PSR9_SCHCM	D8PQS4	D8PSR9	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.999
D8PQS4_SCHCM	D8PTL5_SCHCM	D8PQS4	D8PTL5	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.575
D8PQS4_SCHCM	D8PW12_SCHCM	D8PQS4	D8PW12	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.994
D8PQS4_SCHCM	D8Q8R0_SCHCM	D8PQS4	D8Q8R0	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
D8PSR9_SCHCM	D8PPS6_SCHCM	D8PSR9	D8PPS6	Uncharacterized protein.	Uncharacterized protein.	0.999
D8PSR9_SCHCM	D8PQS4_SCHCM	D8PSR9	D8PQS4	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.999
D8PSR9_SCHCM	D8PTL5_SCHCM	D8PSR9	D8PTL5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.589
D8PSR9_SCHCM	D8PW12_SCHCM	D8PSR9	D8PW12	Uncharacterized protein.	Uncharacterized protein.	0.996
D8PSR9_SCHCM	D8Q8R0_SCHCM	D8PSR9	D8Q8R0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
D8PTL5_SCHCM	D8PPS6_SCHCM	D8PTL5	D8PPS6	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.558
D8PTL5_SCHCM	D8PQ06_SCHCM	D8PTL5	D8PQ06	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.548
D8PTL5_SCHCM	D8PQS4_SCHCM	D8PTL5	D8PQS4	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.575
D8PTL5_SCHCM	D8PSR9_SCHCM	D8PTL5	D8PSR9	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.589