STRINGSTRING
CC1G_06738 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_06738" - Uncharacterized protein in Coprinopsis cinerea
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_06738Uncharacterized protein (116 aa)    
Predicted Functional Partners:
CC1G_01381
Uncharacterized protein (95 aa)
     
 
  0.970
CC1G_09105
Uncharacterized protein (107 aa)
     
 
  0.969
CC1G_14175
Small nuclear ribonucleoprotein LSM2 (73 aa)
     
 
  0.968
CC1G_04648
U6 snRNA-associated Sm-like protein LSm4 (129 aa)
     
 
  0.965
CC1G_10275
Uncharacterized protein (84 aa)
     
 
  0.965
LSM6
U6 snRNA-associated Sm-like protein LSm6; Component of LSm protein complexes, which are involved in RNA processing and may function in a chaperone-like manner, facilitating the efficient association of RNA processing factors with their substrates. Component of the cytoplasmic LSM1-LSM7 complex, which is thought to be involved in mRNA degradation by activating the decapping step in the 5’-to-3’ mRNA decay pathway. Component of the nuclear LSM2-LSM8 complex, which is involved in splicing of nuclear mRNAs. LSM2-LSM8 associates with multiple snRNP complexes containing the U6 snRNA (U4/U6 d [...] (95 aa)
     
 
  0.962
CC1G_12048
Topoisomerase II (1015 aa)
       
 
  0.947
CC1G_11892
5’-3’ exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5’-3’ exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins (1468 aa)
       
 
  0.934
CC1G_08578
ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family (509 aa)
       
 
  0.895
CC1G_11296
DCP2 (679 aa)
       
 
  0.891
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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