STRINGSTRING
CC1G_04494 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_04494" - Uncharacterized protein in Coprinopsis cinerea
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_04494Uncharacterized protein (369 aa)    
Predicted Functional Partners:
CC1G_01269
U4/U6 small nuclear ribonucleoprotein Prp31 (555 aa)
       
 
  0.901
CC1G_00913
Small nuclear ribonucleoprotein (1150 aa)
     
 
  0.881
CC1G_05238
Small nuclear ribonucleoprotein hPrp3 (633 aa)
       
 
  0.871
CC1G_03228
Uncharacterized protein (243 aa)
     
 
  0.817
CC1G_05666
SMB (168 aa)
     
 
  0.742
CC1G_09246
pre-mRNA splicing factor (529 aa)
       
 
  0.730
CC1G_09245
DNA polymerase theta/eta (1636 aa)
       
 
  0.730
CC1G_00261
U1 small nuclear ribonucleoprotein A (218 aa)
       
 
  0.728
CC1G_09998
RNA binding protein (257 aa)
       
 
  0.728
LSM6
U6 snRNA-associated Sm-like protein LSm6; Component of LSm protein complexes, which are involved in RNA processing and may function in a chaperone-like manner, facilitating the efficient association of RNA processing factors with their substrates. Component of the cytoplasmic LSM1-LSM7 complex, which is thought to be involved in mRNA degradation by activating the decapping step in the 5’-to-3’ mRNA decay pathway. Component of the nuclear LSM2-LSM8 complex, which is involved in splicing of nuclear mRNAs. LSM2-LSM8 associates with multiple snRNP complexes containing the U6 snRNA (U4/U6 d [...] (95 aa)
       
      0.724
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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