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CC1G_04557 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_04557" - Small nuclear ribonucleoprotein Sm D3 in Coprinopsis cinerea
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_04557Small nuclear ribonucleoprotein Sm D3 (126 aa)    
Predicted Functional Partners:
CC1G_13677
Uncharacterized protein (87 aa)
     
  0.999
CC1G_00108
Uncharacterized protein (78 aa)
     
  0.999
CC1G_03667
pre-mRNA splicing factor (130 aa)
     
  0.999
CC1G_00096
Small nuclear riboprotein F (81 aa)
     
  0.999
CC1G_13743
U5 small nuclear ribonucleoprotein component (986 aa)
     
 
  0.999
CC1G_10286
pre-mRNA splicing factor (597 aa)
     
 
  0.999
CC1G_10289
Nuclear matrix protein NMP200 (506 aa)
     
 
  0.999
CC1G_05666
SMB (168 aa)
     
  0.999
CC1G_11763
CDC5 (822 aa)
     
 
  0.998
CC1G_05341
pre-mRNA splicing factor prp1 (1051 aa)
     
 
  0.998
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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