STRINGSTRING
CC1G_01886 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_01886" - Uncharacterized protein in Coprinopsis cinerea
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_01886Uncharacterized protein (161 aa)    
Predicted Functional Partners:
CC1G_10334
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre- mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene (1118 aa)
       
 
  0.772
CC1G_14689
Transcription initiation factor IIB (346 aa)
       
 
  0.642
CC1G_04740
Transcription initiation factor IIB (340 aa)
       
 
  0.642
CC1G_11229
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1745 aa)
       
 
  0.634
CC1G_10275
Uncharacterized protein (84 aa)
     
        0.631
CC1G_03770
ATP-dependent RNA helicase SUB2 (432 aa)
           
  0.623
CC1G_08123
Polymerase (595 aa)
     
 
  0.617
CC1G_11565
Cleavage/polyadenylation specificity factor (1135 aa)
       
 
  0.612
CC1G_00223
Phosphoprotein phosphatase (281 aa)
       
 
  0.608
CC1G_05150
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre- mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene (117 aa)
     
 
  0.605
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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