STRINGSTRING
CC1G_05711 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_05711" - DNA cross-link repair protein pso2/snm1 in Coprinopsis cinerea
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_05711DNA cross-link repair protein pso2/snm1 (738 aa)    
Predicted Functional Partners:
CC1G_13640
DNA polymerase; REV3 (1574 aa)
     
 
  0.849
CC1G_02550
Exodeoxyribonuclease 1 (895 aa)
     
 
  0.763
CC1G_01385
Cleavage and polyadenylation specificity factor subunit (926 aa)
     
 
  0.743
CC1G_10538
DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays (343 aa)
       
 
  0.729
CC1G_06293
Flap structure-specific endonuclease (1200 aa)
     
 
  0.717
CC1G_14814
3’ tRNA processing endoribonuclease (946 aa)
   
   
  0.700
CC1G_07736
RAD52 DNA repair protein RADC (584 aa)
       
 
  0.697
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a [...] (422 aa)
     
 
  0.691
CC1G_03293
mRNA 3’-end-processing protein YSH1 (846 aa)
     
   
  0.687
CC1G_13604
Hydrophilic protein (312 aa)
           
  0.686
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
Server load: low (8%) [HD]