STRINGSTRING
CC1G_10559 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_10559" - Uncharacterized protein in Coprinopsis cinerea
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_10559Uncharacterized protein (443 aa)    
Predicted Functional Partners:
CC1G_08578
ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family (509 aa)
     
 
  0.983
CC1G_11296
DCP2 (679 aa)
     
 
  0.960
CC1G_11892
5’-3’ exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5’-3’ exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins (1468 aa)
     
   
  0.874
CC1G_12048
Topoisomerase II (1015 aa)
     
 
  0.873
CC1G_05252
Uncharacterized protein (756 aa)
     
 
  0.869
CC1G_01373
Uncharacterized protein (261 aa)
     
 
  0.867
CC1G_06756
Cap binding protein; Belongs to the eukaryotic initiation factor 4E family (301 aa)
     
 
  0.867
CC1G_06738
Uncharacterized protein (116 aa)
           
  0.845
CC1G_04203
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA (681 aa)
     
 
  0.832
CC1G_14175
Small nuclear ribonucleoprotein LSM2 (73 aa)
       
 
  0.783
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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