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CC1G_01067 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_01067" - ATP dependent helicase in Coprinopsis cinerea
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_01067ATP dependent helicase (1079 aa)    
Predicted Functional Partners:
CC1G_14170
Transcription factor (1141 aa)
     
  0.997
CC1G_10331
Uncharacterized protein (602 aa)
     
  0.991
CC1G_00279
Eukaryotic polypeptide chain release factor 3 (576 aa)
     
 
  0.962
CC1G_09856
Uncharacterized protein (1076 aa)
     
 
  0.956
CC1G_00176
ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family (396 aa)
     
 
  0.948
CC1G_02683
Mago nashi domain-containing protein (147 aa)
     
 
  0.944
CC1G_11296
DCP2 (679 aa)
     
 
  0.937
CC1G_11892
5’-3’ exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5’-3’ exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins (1468 aa)
     
 
  0.903
CC1G_08323
RNP containing family member (164 aa)
     
 
  0.903
CC1G_09967
Cap binding protein 80-PB (891 aa)
     
 
  0.889
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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