STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_01177Uncharacterized protein. (325 aa)    
Predicted Functional Partners:
CC1G_04532
Pre-mRNA-splicing factor SLU7.
   
 
  0.825
CC1G_10331
Smg4_UPF3 domain-containing protein.
   
  0.805
CC1G_02309
Nkap_C domain-containing protein.
   
 
  0.767
CC1G_10286
Pre-mRNA splicing factor.
   
 
  0.763
CC1G_01437
Uncharacterized protein.
    
  0.760
CC1G_09166
Pre-mRNA-splicing factor CWC22.
    
  0.743
CC1G_04568
Uncharacterized protein.
   
 
  0.742
CC1G_03581
RRM domain-containing protein.
   
  0.658
CC1G_01809
Pre-mRNA-splicing factor CWC25.
   
 
  0.654
CC1G_02454
RRM domain-containing protein.
   
  0.654
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 240176
Other names: C. cinerea okayama7#130, Coprinopsis cinerea okayama7#130, Coprinus cinereus okayama7#130
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