STRINGSTRING
CC1G_01186 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_01186" - Small nuclear ribonucleoprotein in Coprinopsis cinerea
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_01186Small nuclear ribonucleoprotein (281 aa)    
Predicted Functional Partners:
CC1G_14624
Peptide-binding protein (706 aa)
     
      0.998
CC1G_10286
pre-mRNA splicing factor (597 aa)
       
      0.998
CC1G_12379
U1 snRNP 70K protein (380 aa)
     
 
  0.969
CC1G_08998
pre-mRNA-processing protein prp40 (800 aa)
     
 
  0.963
CC1G_01380
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (209 aa)
     
 
  0.950
CC1G_03406
Uncharacterized protein (606 aa)
     
 
  0.946
CC1G_08852
RNA-binding protein Csx1 (808 aa)
     
 
  0.910
CC1G_04557
Small nuclear ribonucleoprotein Sm D3 (126 aa)
     
 
  0.891
CC1G_05666
SMB (168 aa)
     
 
  0.887
CC1G_10508
Small nuclear ribonucleoprotein polypeptide A (245 aa)
     
 
  0.872
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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