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CC1G_05189 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_05189" - pre-RNA splicing factor 38A in Coprinopsis cinerea
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_05189pre-RNA splicing factor 38A (296 aa)    
Predicted Functional Partners:
CC1G_03736
Microfibrillar-associated protein 1 (1095 aa)
     
 
  0.999
CC1G_14624
Peptide-binding protein (706 aa)
     
 
  0.998
CC1G_04557
Small nuclear ribonucleoprotein Sm D3 (126 aa)
     
 
  0.963
CC1G_05666
SMB (168 aa)
     
 
  0.946
CC1G_00913
Small nuclear ribonucleoprotein (1150 aa)
     
 
  0.938
CC1G_03228
Uncharacterized protein (243 aa)
       
 
  0.935
CC1G_05238
Small nuclear ribonucleoprotein hPrp3 (633 aa)
     
 
  0.925
CC1G_14869
pre-mRNA splicing factor ini1 (154 aa)
     
 
  0.924
CC1G_14175
Small nuclear ribonucleoprotein LSM2 (73 aa)
     
 
  0.920
CC1G_01038
SnRNP subunit; Small nucleolar ribonucleoprotein SNU13 (126 aa)
     
 
  0.920
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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