STRINGSTRING
CC1G_02240 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_02240" - RNA polymerase III transcription factor in Coprinopsis cinerea
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_02240RNA polymerase III transcription factor (689 aa)    
Predicted Functional Partners:
CC1G_14587
Uncharacterized protein (762 aa)
     
 
  0.912
CC1G_05568
Transcription factor TFIIIB complex subunit brf1 (864 aa)
     
 
  0.903
CC1G_10676
Uncharacterized protein (770 aa)
     
 
  0.830
CC1G_09234
Uncharacterized protein (194 aa)
       
 
  0.800
CC1G_01816
Uncharacterized protein (565 aa)
     
 
  0.735
CC1G_09222
Cleavage factor protein (1458 aa)
     
      0.733
CC1G_01385
Cleavage and polyadenylation specificity factor subunit (926 aa)
     
      0.727
CC1G_12054
Uncharacterized protein (494 aa)
     
 
  0.698
CC1G_11509
Transcription initiation factor TFIID-1 (308 aa)
     
 
  0.647
CC1G_05154
Uncharacterized protein (505 aa)
     
 
  0.626
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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