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CC1G_07806 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_07806" - Lariat debranching enzyme in Coprinopsis cinerea
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_07806Lariat debranching enzyme (333 aa)    
Predicted Functional Partners:
CC1G_01100
Nuclear protein (678 aa)
     
 
  0.775
CC1G_12010
pre-mRNA splicing factor (1312 aa)
     
 
  0.774
CC1G_08170
Double-stranded RNA binding domain-containing protein-containing protein (435 aa)
     
 
  0.647
CC1G_09925
MTR4 (1059 aa)
     
      0.605
CC1G_10334
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre- mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene (1118 aa)
           
  0.518
CC1G_03919
Crm1-F1 (1077 aa)
     
 
  0.517
CC1G_13335
pre-mRNA splicing factor (360 aa)
     
   
  0.483
CC1G_01759
Uncharacterized protein (352 aa)
     
 
  0.459
CC1G_11892
5’-3’ exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5’-3’ exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins (1468 aa)
     
 
  0.428
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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