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CC1G_02939 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_02939" - RNA-binding protein Prp24 in Coprinopsis cinerea
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_02939RNA-binding protein Prp24 (1042 aa)    
Predicted Functional Partners:
CC1G_14175
Small nuclear ribonucleoprotein LSM2 (73 aa)
     
 
  0.962
CC1G_04648
U6 snRNA-associated Sm-like protein LSm4 (129 aa)
       
 
  0.957
CC1G_03551
Uncharacterized protein (95 aa)
       
 
  0.951
CC1G_01381
Uncharacterized protein (95 aa)
     
 
  0.923
CC1G_01269
U4/U6 small nuclear ribonucleoprotein Prp31 (555 aa)
     
 
  0.900
LSM6
U6 snRNA-associated Sm-like protein LSm6; Component of LSm protein complexes, which are involved in RNA processing and may function in a chaperone-like manner, facilitating the efficient association of RNA processing factors with their substrates. Component of the cytoplasmic LSM1-LSM7 complex, which is thought to be involved in mRNA degradation by activating the decapping step in the 5’-to-3’ mRNA decay pathway. Component of the nuclear LSM2-LSM8 complex, which is involved in splicing of nuclear mRNAs. LSM2-LSM8 associates with multiple snRNP complexes containing the U6 snRNA (U4/U6 d [...] (95 aa)
     
 
  0.843
CC1G_09105
Uncharacterized protein (107 aa)
       
 
  0.811
CC1G_10275
Uncharacterized protein (84 aa)
       
 
  0.790
CC1G_05341
pre-mRNA splicing factor prp1 (1051 aa)
     
   
  0.778
CC1G_07963
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (179 aa)
       
 
  0.761
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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