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CC1G_02978 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_02978" - pre-mRNA splicing factor in Coprinopsis cinerea
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_02978pre-mRNA splicing factor (1090 aa)    
Predicted Functional Partners:
CC1G_09166
pre-mRNA-splicing factor CWC22 (890 aa)
     
 
  0.963
CC1G_05131
Spliceosome complex protein (1006 aa)
     
 
  0.953
CC1G_10286
pre-mRNA splicing factor (597 aa)
     
 
  0.953
CC1G_13743
U5 small nuclear ribonucleoprotein component (986 aa)
     
 
  0.920
CC1G_00913
Small nuclear ribonucleoprotein (1150 aa)
     
 
  0.918
CC1G_01767
Splicing factor 3a (220 aa)
       
 
  0.909
CC1G_03236
Spliceosomal zinc finger-containing protein (332 aa)
     
 
  0.908
CC1G_10184
Spliceosome associated protein 145 (599 aa)
     
 
  0.903
CC1G_03829
pre-mRNA splicing factor (760 aa)
     
 
  0.903
CC1G_11166
pre-mRNA-splicing factor CWC26 (322 aa)
     
 
  0.886
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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