STRINGSTRING
CC1G_07578 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_07578" - polyA+ RNA export in Coprinopsis cinerea
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_07578polyA+ RNA export (356 aa)    
Predicted Functional Partners:
CC1G_10065
Uncharacterized protein (618 aa)
     
  0.976
CC1G_14684
Nucleoporin autopeptidase (964 aa)
     
  0.967
CC1G_03506
Nucleoporin nup189 (985 aa)
     
  0.967
CC1G_09505
Uncharacterized protein (561 aa)
     
 
  0.895
CC1G_12190
Nuclear pore protein; Nucleoporin-interacting protein NIC96 (866 aa)
     
 
  0.863
CC1G_12569
Poly(A)+ RNA export protein (353 aa)
   
   
 
0.801
CC1G_10941
Uncharacterized protein (506 aa)
     
 
  0.766
CC1G_06299
Uncharacterized protein (2074 aa)
     
 
  0.750
CC1G_00431
Nuclear pore glycoprotein p62 (513 aa)
     
 
  0.710
CC1G_05619
Protein transporter SEC13; Belongs to the WD repeat SEC13 family (354 aa)
   
 
  0.704
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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