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CC1G_08102 protein (Coprinopsis cinerea) - STRING interaction network
"CC1G_08102" - Ku70 in Coprinopsis cinerea
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_08102Ku70 (559 aa)    
Predicted Functional Partners:
CC1G_08633
Ku80 (855 aa)
     
 
  0.996
LIG4
DNA ligase 4; Involved in ds DNA break repair. Has a role in non- homologous integration (NHI) pathways where it is required in the final step of non-homologous end-joining; Belongs to the ATP-dependent DNA ligase family (970 aa)
     
 
  0.959
MRE11
Double-strand break repair protein MRE11; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand- specific 3’-5’ exonuclease activity. Also involved in meiotic DSB processing (By similarity); Belongs to the MRE11/RAD32 family (735 aa)
     
 
  0.956
CC1G_13908
Uncharacterized protein (920 aa)
     
 
  0.941
CC1G_07448
DNA helicase (1129 aa)
     
 
  0.940
CC1G_02550
Exodeoxyribonuclease 1 (895 aa)
     
 
  0.939
CC1G_03010
RAD50 (1309 aa)
     
 
  0.939
CC1G_11289
DNA ligase I (803 aa)
     
 
  0.938
CC1G_02812
CAMK/CAMKL/CHK1 protein kinase; Belongs to the protein kinase superfamily (462 aa)
     
 
  0.935
CC1G_04200
poly(ADP)-ribose polymerase (702 aa)
     
 
  0.929
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 5346
Other names: C. cinerea, Coprinopsis cinerea, Coprinus cinereus, Coprinus macrorhizus
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