STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_000194U3 small nucleolar rna-associated protein. (823 aa)    
Predicted Functional Partners:
LENED_002929
Utp21-domain-containing protein.
   
 0.999
LENED_009260
WD40 repeat-like protein.
   
 0.999
LENED_009339
WD40 repeat-like protein.
  
0.999
LENED_009679
WD-repeat-containing protein.
  
0.999
LENED_001873
U3 small nucleolar RNA-associated protein 10.
   
 0.998
LENED_000248
S-adenosyl-L-methionine-dependent methyltransferase.
   
 0.997
LENED_010379
NUC189-domain-containing protein.
   
 0.997
LENED_003847
Nop domain-containing protein.
   
 0.996
LENED_006679
GTP binding protein.
   
 
 0.996
LENED_006762
BING4CT-domain-containing protein.
   
 
 0.996
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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