LENED_001456 protein (Lentinula edodes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LENED_001456

Acyl-dehydrogenase NM domain-like protein. (277 aa)

Predicted Functional Partners:

LENED_009113

0.966

LENED_004021

0.961

LENED_010677

0.958

LENED_010678

0.956

LENED_007392

0.952

LENED_004020

0.932

LENED_007967

0.932

LENED_006099

0.920

LENED_003472

0.918

LENED_004882

0.881

Your Current Organism:

Lentinula edodes

NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LENED_001456	LENED_003472	A0A1Q3DYH2	A0A1Q3E3V3	Acyl-dehydrogenase NM domain-like protein.	Acyl-dehydrogenase NM domain-like protein.	0.918
LENED_001456	LENED_004020	A0A1Q3DYH2	A0A1Q3E562	Acyl-dehydrogenase NM domain-like protein.	Peroxisomal-enoyl-isomerase.	0.932
LENED_001456	LENED_004021	A0A1Q3DYH2	A0A1Q3E5S4	Acyl-dehydrogenase NM domain-like protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.961
LENED_001456	LENED_004882	A0A1Q3DYH2	A0A1Q3E7M6	Acyl-dehydrogenase NM domain-like protein.	Electron transfer flavo protein beta subunit.	0.881
LENED_001456	LENED_006099	A0A1Q3DYH2	A0A1Q3EAU4	Acyl-dehydrogenase NM domain-like protein.	Electron transfer flavo protein alpha subunit.	0.920
LENED_001456	LENED_007392	A0A1Q3DYH2	A0A1Q3EEE1	Acyl-dehydrogenase NM domain-like protein.	Enoyl-hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.952
LENED_001456	LENED_007967	A0A1Q3DYH2	A0A1Q3EFU8	Acyl-dehydrogenase NM domain-like protein.	Acyl-binding protein.	0.932
LENED_001456	LENED_009113	A0A1Q3DYH2	A0A1Q3EIX5	Acyl-dehydrogenase NM domain-like protein.	Methylcrotonoyl-carboxylase subunit mitochondrial-like.	0.966
LENED_001456	LENED_010677	A0A1Q3DYH2	A0A1Q3EN22	Acyl-dehydrogenase NM domain-like protein.	Carboxyl transferase.	0.958
LENED_001456	LENED_010678	A0A1Q3DYH2	A0A1Q3EN16	Acyl-dehydrogenase NM domain-like protein.	Carboxyl transferase.	0.956
LENED_003472	LENED_001456	A0A1Q3E3V3	A0A1Q3DYH2	Acyl-dehydrogenase NM domain-like protein.	Acyl-dehydrogenase NM domain-like protein.	0.918
LENED_003472	LENED_004020	A0A1Q3E3V3	A0A1Q3E562	Acyl-dehydrogenase NM domain-like protein.	Peroxisomal-enoyl-isomerase.	0.691
LENED_003472	LENED_007392	A0A1Q3E3V3	A0A1Q3EEE1	Acyl-dehydrogenase NM domain-like protein.	Enoyl-hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.917
LENED_003472	LENED_007967	A0A1Q3E3V3	A0A1Q3EFU8	Acyl-dehydrogenase NM domain-like protein.	Acyl-binding protein.	0.691
LENED_003472	LENED_009113	A0A1Q3E3V3	A0A1Q3EIX5	Acyl-dehydrogenase NM domain-like protein.	Methylcrotonoyl-carboxylase subunit mitochondrial-like.	0.895
LENED_003472	LENED_010677	A0A1Q3E3V3	A0A1Q3EN22	Acyl-dehydrogenase NM domain-like protein.	Carboxyl transferase.	0.820
LENED_003472	LENED_010678	A0A1Q3E3V3	A0A1Q3EN16	Acyl-dehydrogenase NM domain-like protein.	Carboxyl transferase.	0.820
LENED_004020	LENED_001456	A0A1Q3E562	A0A1Q3DYH2	Peroxisomal-enoyl-isomerase.	Acyl-dehydrogenase NM domain-like protein.	0.932
LENED_004020	LENED_003472	A0A1Q3E562	A0A1Q3E3V3	Peroxisomal-enoyl-isomerase.	Acyl-dehydrogenase NM domain-like protein.	0.691
LENED_004020	LENED_004882	A0A1Q3E562	A0A1Q3E7M6	Peroxisomal-enoyl-isomerase.	Electron transfer flavo protein beta subunit.	0.758