STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_002721Carbohydrate esterase family 16 protein. (300 aa)    
Predicted Functional Partners:
LENED_011462
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.997
LENED_006534
Ribonuclease H-like protein.
   
 0.976
LENED_001745
Replication factor-a protein 1.
   
 0.944
LENED_001741
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
   
 0.944
LENED_001306
Dna repair and recombination protein rhm52.
    
 0.932
LENED_004106
Inositol kinase kinase; Belongs to the PI3/PI4-kinase family.
   
 0.930
LENED_010469
Dna primase large subunit.
   
 0.923
LENED_001848
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
   
 0.919
LENED_007605
DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.
   
 0.883
LENED_006516
DNA repair protein.
    
 0.872
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.