LENED_003323 protein (Lentinula edodes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LENED_003323

Peroxisomal membrane protein. (412 aa)

Predicted Functional Partners:

LENED_010041

0.995

LENED_000561

0.978

LENED_001862

0.978

LENED_001861

0.978

LENED_004398

0.977

LENED_006100

0.973

LENED_006049

0.970

LENED_000910

0.969

LENED_002016

0.964

LENED_004020

0.963

Your Current Organism:

Lentinula edodes

NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LENED_000561	LENED_000910	A0A1Q3DVU8	A0A1Q3DWS4	Uncharacterized protein.	Cyclin-dependent protein kinase inhibitor.	0.914
LENED_000561	LENED_001861	A0A1Q3DVU8	A0A1Q3E014	Uncharacterized protein.	Peroxin19 pex19p.	0.943
LENED_000561	LENED_001862	A0A1Q3DVU8	A0A1Q3DZB0	Uncharacterized protein.	Peroxin19 pex19p.	0.943
LENED_000561	LENED_002016	A0A1Q3DVU8	A0A1Q3DZS4	Uncharacterized protein.	WD40 repeat-like protein.	0.958
LENED_000561	LENED_003323	A0A1Q3DVU8	A0A1Q3E3A0	Uncharacterized protein.	Peroxisomal membrane protein.	0.978
LENED_000561	LENED_004020	A0A1Q3DVU8	A0A1Q3E562	Uncharacterized protein.	Peroxisomal-enoyl-isomerase.	0.963
LENED_000561	LENED_004398	A0A1Q3DVU8	A0A1Q3E665	Uncharacterized protein.	Sterol carrier protein 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.971
LENED_000561	LENED_006049	A0A1Q3DVU8	A0A1Q3EAP5	Uncharacterized protein.	Peroxisomal targeting signal 1 receptor.	0.945
LENED_000561	LENED_006100	A0A1Q3DVU8	A0A1Q3EB16	Uncharacterized protein.	TPR-like protein.	0.945
LENED_000910	LENED_000561	A0A1Q3DWS4	A0A1Q3DVU8	Cyclin-dependent protein kinase inhibitor.	Uncharacterized protein.	0.914
LENED_000910	LENED_001861	A0A1Q3DWS4	A0A1Q3E014	Cyclin-dependent protein kinase inhibitor.	Peroxin19 pex19p.	0.955
LENED_000910	LENED_001862	A0A1Q3DWS4	A0A1Q3DZB0	Cyclin-dependent protein kinase inhibitor.	Peroxin19 pex19p.	0.955
LENED_000910	LENED_002016	A0A1Q3DWS4	A0A1Q3DZS4	Cyclin-dependent protein kinase inhibitor.	WD40 repeat-like protein.	0.820
LENED_000910	LENED_003323	A0A1Q3DWS4	A0A1Q3E3A0	Cyclin-dependent protein kinase inhibitor.	Peroxisomal membrane protein.	0.969
LENED_000910	LENED_004020	A0A1Q3DWS4	A0A1Q3E562	Cyclin-dependent protein kinase inhibitor.	Peroxisomal-enoyl-isomerase.	0.959
LENED_000910	LENED_004398	A0A1Q3DWS4	A0A1Q3E665	Cyclin-dependent protein kinase inhibitor.	Sterol carrier protein 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.965
LENED_000910	LENED_006049	A0A1Q3DWS4	A0A1Q3EAP5	Cyclin-dependent protein kinase inhibitor.	Peroxisomal targeting signal 1 receptor.	0.970
LENED_000910	LENED_006100	A0A1Q3DWS4	A0A1Q3EB16	Cyclin-dependent protein kinase inhibitor.	TPR-like protein.	0.970
LENED_000910	LENED_010041	A0A1Q3DWS4	A0A1Q3ELB1	Cyclin-dependent protein kinase inhibitor.	Peroxisomal membrane anchor protein.	0.914
LENED_001861	LENED_000561	A0A1Q3E014	A0A1Q3DVU8	Peroxin19 pex19p.	Uncharacterized protein.	0.943