STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_004201Tryptophanyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (468 aa)    
Predicted Functional Partners:
LENED_001898
Tryptophanyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.909
LENED_001899
Tryptophanyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.909
LENED_005310
Seryl-trna synthetase.
  
 
 0.792
LENED_012514
Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.
  
  
 0.737
LENED_007603
Nucleic acid-binding protein.
 
 
 0.704
LENED_009030
Seryl-trna synthetase.
  
 
 0.699
LENED_005870
Leucyl-tRNA synthetase.
  
 
 0.673
LENED_000347
Phenylalanyl-tRNA synthetase subunit beta.
  
  
 0.670
LENED_009320
Tyrosine--tRNA ligase.
  
  
 0.668
LENED_012278
Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.662
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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