STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_005617Ring-14 protein. (491 aa)    
Predicted Functional Partners:
LENED_002001
Ubiquitin-domain-containing protein.
    
  0.830
LENED_002730
BRCT domain-containing protein.
    
 0.811
LENED_010617
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.799
LENED_004256
Ubiquitin-60S ribosomal protein L40 fusion protein.
    
  0.769
LENED_008229
Ubiquitin.
    
  0.769
LENED_007306
Ubiquitin C.
    
  0.755
LENED_007305
Polyubiquitin Ubi4.
    
  0.755
LENED_011525
Ubiquitin.
    
  0.755
LENED_008348
UBC-like protein.
     
 0.670
LENED_007121
Ubiquitin-protein ligase; Belongs to the cullin family.
    
 0.656
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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