STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_005806Cytoplasm to vacuole targeting vps64. (163 aa)    
Predicted Functional Partners:
LENED_002001
Ubiquitin-domain-containing protein.
    
  0.867
LENED_008074
2-oxoglutarate dehydrogenase complex E1 component mitochondrial.
    
 
 0.855
LENED_008348
UBC-like protein.
   
 0.833
LENED_004256
Ubiquitin-60S ribosomal protein L40 fusion protein.
    
  0.795
LENED_008229
Ubiquitin.
    
  0.795
LENED_007306
Ubiquitin C.
    
 0.787
LENED_007305
Polyubiquitin Ubi4.
    
 0.787
LENED_011525
Ubiquitin.
    
 0.787
LENED_001269
Ubiquitin-conjugating enzyme E2 4.
   
 0.772
LENED_002730
BRCT domain-containing protein.
    
 0.772
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.