STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_007396Rho gtpase-activating protein 39 isoform 2. (1022 aa)    
Predicted Functional Partners:
LENED_008426
Actinin-like protein.
    
 0.700
LENED_010013
Small GTPase Rac1.
    
 0.675
LENED_010035
Testis-expressed sequence 10 protein.
    
 0.653
LENED_007836
Cysteine proteinase.
    
  0.649
LENED_001678
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
  0.644
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.625
LENED_002520
Nonmuscle myosin heavy chain b; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.621
LENED_000851
Actin 1.
    
  0.613
LENED_005425
Actin-like protein; Belongs to the actin family.
    
  0.613
LENED_008925
Actin 1.
    
  0.613
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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